sequence_stores

Creates, updates, deletes or gets a sequence_store resource or lists sequence_stores in a region

Overview

Name	sequence_stores
Type	Resource
Description	Resource Type definition for AWS::Omics::SequenceStore
Id	awscc.omics.sequence_stores

Fields

Name	Datatype	Description
access_log_location	string	Location of the access logs.
arn	string	The store's ARN.
creation_time	string	When the store was created.
description	string	A description for the store.
e_tag_algorithm_family	string
fallback_location	string	An S3 location that is used to store files that have failed a direct upload.
name	string	A name for the store.
propagated_set_level_tags	array	The tags keys to propagate to the S3 objects associated with read sets in the sequence store.
s3_access_point_arn	string	This is ARN of the access point associated with the S3 bucket storing read sets.
s3_access_policy	object	The resource policy that controls S3 access on the store
s3_uri	string	The S3 URI of the sequence store.
sequence_store_id	string
▶sse_config	object
status	string
status_message	string	The status message of the sequence store.
tags	object	A map of resource tags
update_time	string	The last-updated time of the sequence store.
region	string	AWS region.

For more information, see AWS::Omics::SequenceStore.

Methods

Name	Accessible by	Required Params
create_resource	INSERT	Name, region
delete_resource	DELETE	data__Identifier, region
update_resource	UPDATE	data__Identifier, data__PatchDocument, region
list_resources	SELECT	region
get_resource	SELECT	data__Identifier, region

SELECT examples

Gets all properties from an individual sequence_store.

SELECT
region,
access_log_location,
arn,
creation_time,
description,
e_tag_algorithm_family,
fallback_location,
name,
propagated_set_level_tags,
s3_access_point_arn,
s3_access_policy,
s3_uri,
sequence_store_id,
sse_config,
status,
status_message,
tags,
update_time
FROM awscc.omics.sequence_stores
WHERE region = 'us-east-1' AND data__Identifier = '<SequenceStoreId>';

INSERT example

Use the following StackQL query and manifest file to create a new sequence_store resource, using stack-deploy.

Required Properties

/*+ create */
INSERT INTO awscc.omics.sequence_stores (
 Name,
 region
)
SELECT 
'{{ Name }}',
'{{ region }}';

All Properties

/*+ create */
INSERT INTO awscc.omics.sequence_stores (
 AccessLogLocation,
 Description,
 ETagAlgorithmFamily,
 FallbackLocation,
 Name,
 PropagatedSetLevelTags,
 S3AccessPolicy,
 SseConfig,
 Tags,
 region
)
SELECT 
 '{{ AccessLogLocation }}',
 '{{ Description }}',
 '{{ ETagAlgorithmFamily }}',
 '{{ FallbackLocation }}',
 '{{ Name }}',
 '{{ PropagatedSetLevelTags }}',
 '{{ S3AccessPolicy }}',
 '{{ SseConfig }}',
 '{{ Tags }}',
 '{{ region }}';

Manifest

version: 1
name: stack name
description: stack description
providers:
  - aws
globals:
  - name: region
    value: '{{ vars.AWS_REGION }}'
resources:
  - name: sequence_store
    props:
      - name: AccessLogLocation
        value: '{{ AccessLogLocation }}'
      - name: Description
        value: '{{ Description }}'
      - name: ETagAlgorithmFamily
        value: '{{ ETagAlgorithmFamily }}'
      - name: FallbackLocation
        value: '{{ FallbackLocation }}'
      - name: Name
        value: '{{ Name }}'
      - name: PropagatedSetLevelTags
        value:
          - '{{ PropagatedSetLevelTags[0] }}'
      - name: S3AccessPolicy
        value: {}
      - name: SseConfig
        value:
          Type: '{{ Type }}'
          KeyArn: '{{ KeyArn }}'
      - name: Tags
        value: {}

DELETE example

/*+ delete */
DELETE FROM awscc.omics.sequence_stores
WHERE data__Identifier = '<SequenceStoreId>'
AND region = 'us-east-1';

Permissions

To operate on the sequence_stores resource, the following permissions are required:

Create

omics:CreateSequenceStore,
omics:GetSequenceStore,
omics:GetS3AccessPolicy,
omics:PutS3AccessPolicy,
omics:ListTagsForResource,
omics:TagResource,
kms:DescribeKey

Read

omics:GetS3AccessPolicy,
omics:GetSequenceStore,
omics:ListTagsForResource

Update

omics:UpdateSequenceStore,
omics:GetSequenceStore,
omics:TagResource,
omics:UntagResource,
omics:ListTagsForResource,
omics:GetS3AccessPolicy,
omics:DeleteS3AccessPolicy,
omics:PutS3AccessPolicy

Delete

omics:DeleteSequenceStore

List

omics:ListSequenceStores